• A comprehensive analysis of classification methods in gastrointestinal endoscopy imaging 

      Jha, Debesh; Ali, Sharib; Hicks, Steven; Thambawita, Vajira L B; Borgli, Hanna; Smedsrud, Pia H.; de Lange, Thomas; Pogorelov, Konstantin; Wang, Xiaowei; Harzig, Philipp; Tran, Minh-Triet; Meng, Wenhua; Hoang, Trung-Hieu; Dias, Danielle; Ko, Tobey H.; Agrawal, Taruna; Ostroukhova, Olga; Khan, Zeshan; Tahir, Muhammed Atif; Liu, Yang; Chang, Yuan; Kirkerød, Mathias; Johansen, Dag; Lux, Mathias; Johansen, Håvard D.; Riegler, Michael; Halvorsen, Pål (Peer reviewed; Journal article, 2021)
      Gastrointestinal (GI) endoscopy has been an active field of research motivated by the large number of highly lethal GI cancers. Early GI cancer precursors are often missed during the endoscopic surveillance. The high missed ...
    • A Comprehensive Study on Colorectal Polyp Segmentation with ResUNet++, Conditional Random Field and Test-Time Augmentation 

      Jha, Debesh; Smedsrud, Pia; Johansen, Dag; de Lange, Thomas; Johansen, Håvard D.; Halvorsen, Pål; Riegler, Michael Alexander (IEEE journal of biomedical and health informatics; Volume: 25, Issue: 6, June 2021, Journal article; Peer reviewed, 2021-01-05)
      Colonoscopy is considered the gold standard for detection of colorectal cancer and its precursors. Existing examination methods are, however, hampered by high overall miss-rate, and many abnormalities are left undetected. ...
    • Deep learning for automated polyp detection and localization in colonoscopy 

      Patra, Amita (Master thesis, 2022)
      Gastrointestinal (GI) tract comprises organs from mouth to anus. Multiple diseases can occur in the GI tract. Among the different diseases in the digestive system, the most commonly found cancer in the gastrointestinal ...
    • DoubleU-Net: A Deep Convolutional Neural Network for Medical Image Segmentation 

      Jha, Debesh; Riegler, Michael Alexander; Johansen, Dag; Halvorsen, Pål; Johansen, Håvard D. (IEEE International Symposium on Computer-Based Medical Systems; 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS), Book; Conference object; Peer reviewed, 2020-09-01)
      Semantic image segmentation is the process of labeling each pixel of an image with its corresponding class. An encoder-decoder based approach, like U-Net and its variants, is a popular strategy for solving medical image ...
    • HyperKvasir, a comprehensive multi-class image and video dataset for gastrointestinal endoscopy 

      Borgli, Hanna; Thambawita, Vajira; Smedsrud, Pia H; Hicks, Steven; Jha, Debesh; Eskeland, Sigrun Losada; Randel, Kristin Ranheim; Pogorelov, Konstantin; Lux, Mathias; Dang Nguyen, Duc Tien; Johansen, Dag; Griwodz, Carsten; Stensland, Håkon Kvale; Garcia-Ceja, Enrique; Schmidt, Peter T; Hammer, Hugo Lewi; Riegler, Michael; Halvorsen, Pål; de Lange, Thomas (Scientific Data;7, Article number: 283 (2020), Journal article; Peer reviewed, 2020-08-28)
      Artifcial intelligence is currently a hot topic in medicine. However, medical data is often sparse and hard to obtain due to legal restrictions and lack of medical personnel for the cumbersome and tedious process to manually ...
    • Kvasir-Capsule, a video capsule endoscopy dataset 

      Smedsrud, Pia H; Thambawita, Vajira L B; Hicks, Steven; Gjestang, Henrik; Olsen Nedrejord, Oda; Næss, Espen; Borgli, Hanna; Jha, Debesh; Berstad, Tor Jan; Eskeland, Sigrun Losada; Lux, Mathias; Espeland, Håvard; Petlund, Andreas; Dang Nguyen, Duc Tien; Garcia, Enrique; Johansen, Dag; Schmidt, Peter Thelin; Toth, Ervin; Hammer, Hugo Lewi; de Lange, Thomas; Riegler, Michael Alexander; Halvorsen, Pål (Scientific Data;8, Article number: 142 (2021), Peer reviewed; Journal article, 2021-05-27)
      Artificial intelligence (AI) is predicted to have profound effects on the future of video capsule endoscopy (VCE) technology. The potential lies in improving anomaly detection while reducing manual labour. Existing work ...
    • Kvasir-SEG: A Segmented Polyp Dataset 

      Jha, Debesh; Pia H, Smedsrud; Riegler, Michael; Halvorsen, Pål; de Lange, Thomas; Johansen, Dag; Johansen, Håvard D. (Lecture Notes in Computer Science;Volume 11962, Chapter; Conference object; Peer reviewed, 2019-12-24)
      Pixel-wise image segmentation is a highly demanding task in medical-image analysis. In practice, it is difficult to find annotated medical images with corresponding segmentation masks. In this paper, we present Kvasir-SEG: ...
    • LightLayers: Parameter Efficient Dense and Convolutional Layers for Image Classification 

      Jha, Debesh; Yazidi, Anis; Riegler, Michael Alexander; Johansen, Dag; Johansen, Håvard D.; Halvorsen, Pål (Lecture Notes in Computer Science;Volume 12606, Chapter; Peer reviewed; Conference object; Journal article, 2021-02-21)
      Deep Neural Networks (DNNs) have become the de-facto standard in computer vision, as well as in many other pattern recognition tasks. A key drawback of DNNs is that the training phase can be very computationally expensive. ...
    • Meta-learning with implicit gradients in a few-shot setting for medical image segmentation 

      Khadka, Rabindra; Jha, Debesh; Riegler, Michael A.; Hicks, Steven; Thambawita, Vajira; Ali, Sharib; Halvorsen, Pål (Computers in Biology and Medicine;Volume 143, April 2022, 105227, Peer reviewed; Journal article, 2022-02-03)
      Widely used traditional supervised deep learning methods require a large number of training samples but often fail to generalize on unseen datasets. Therefore, a more general application of any trained model is quite limited ...
    • PMData: a sports logging dataset 

      Thambawita, Vajira; Hicks, Steven; Borgli, Hanna; Stensland, Håkon Kvale; Jha, Debesh; Svensen, Martin Kristoffer; Pettersen, Svein Arne; Johansen, Dag; Johansen, Håvard D.; Pettersen, Susann Dahl; Nordvang, Simon; Pedersen, Sigurd; Gjerdrum, Anders Tungeland; Grønli, Tor-Morten; Fredriksen, Per Morten; Eg, Ragnhild; Hansen, Kjeld S.; Fagernes, Siri; Claudi, Christine; Biørn-Hansen, Andreas; Dang Nguyen, Duc Tien; Kupka, Tomas; Hammer, Hugo Lewi; Jain, Ramesh; Riegler, Michael; Halvorsen, Pål (MM: International Multimedia Conference;MMSys '20: Proceedings of the 11th ACM Multimedia Systems Conference, Chapter; Conference object; Peer reviewed, 2020-05-27)
      In this paper, we present PMData: a dataset that combines traditional lifelogging data with sports-activity data. Our dataset enables the development of novel data analysis and machine-learning applications where, for ...
    • Real-Time Polyp Detection, Localization and Segmentation in Colonoscopy Using Deep Learning 

      Jha, Debesh; Ali, Sharib; Tomar, Nikhil Kumar; Johansen, Håvard D.; Johansen, Dag; Rittscher, Jens; Riegler, Michael A.; Halvorsen, Pal (IEEE Access;Volume: 9, Peer reviewed; Journal article, 2021-03-04)
      Computer-aided detection, localization, and segmentation methods can help improve colonoscopy procedures. Even though many methods have been built to tackle automatic detection and segmentation of polyps, benchmarking of ...
    • Real-Time Polyp Detection, Localization and Segmentation in Colonoscopy Using Deep Learning 

      Jha, Debesh; Ali, Sharib; Tomar, Nikhil Kumar; Johansen, Håvard D.; Johansen, Dag; Rittscher, Jens; Riegler, Michael; Halvorsen, Pål (IEEE Access;Volume: 9, 2021, Peer reviewed; Journal article, 2021-03-04)
      Computer-aided detection, localization, and segmentation methods can help improve colonoscopy procedures. Even though many methods have been built to tackle automatic detection and segmentation of polyps, benchmarking of ...
    • ResUNet++: An Advanced Architecture for Medical Image Segmentation 

      Jha, Debesh; Smedsrud, Pia; Riegler, Michael; Johansen, Dag; de Lange, Thomas; Halvorsen, Pål; Johansen, Håvard D. (IEEE International Symposium on Multimedia; 2019 IEEE International Symposium on Multimedia (ISM), Chapter; Conference object; Peer reviewed, 2020-01-16)
      Accurate computer-aided polyp detection and segmentation during colonoscopy examinations can help endoscopists resect abnormal tissue and thereby decrease chances of polyps growing into cancer. Towards developing a fully ...